Alignment of alleles: Channel catfish (Ictalurus punctatus) IGHV8S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 C   Q   T   L   T   E   S   E   P       V   V   L   K   P   G   G   S   H   Q
  AY238377,IGHV8S1*01           TGT CAG ACC CTA ACT GAG TCT GAG CCG ... GTG GTC CTT AAA CCT GGA GGA TCT CAT CAA

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   T   C   T   Y   S   G   I   S   D   S   D   A   A                   I   S
  AY238377,IGHV8S1*01           CTC ACC TGT ACC TAC TCT GGG ATT AGT GAT AGT GAT GCA GCT ... ... ... ... ATA TCC

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   I   R   Q   A   Q   G   K   G   L   E   W   I   S   L   I   S   A   P   S
  AY238377,IGHV8S1*01           TGG ATT AGA CAG GCT CAA GGG AAA GGC CTT GAG TGG ATC TCA CTC ATT TCT GCT CCG AGT

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 G   S   T   K       Q   Y   S   Q   S   V   Q       G   R   F   S   I   S   R
  AY238377,IGHV8S1*01           GGT AGT ACT AAA ... CAA TAC TCT CAG TCT GTT CAG ... GGA AGA TTC TCC ATC TCC AGA

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D   N   S   K   K   Q   V   Y   L   H   M   T   S   L   K   T   E   D   T   A
  AY238377,IGHV8S1*01           GAC AAC AGC AAG AAG CAG GTG TAT CTG CAT ATG ACC AGC CTG AAG ACT GAA GAC ACT GCT

                                                __CDR3-IMGT__
                                101 102 103 104 105 106 107
                                 V   Y   Y   C   A   R   R
  AY238377,IGHV8S1*01           GTG TAT TAC TGT GCT CGG AGA A

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 06/11/2003
Author: Nathalie Bosc